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Information for unigene UN18288
| FASTA Sequence |
| Unigene ID: UN18288 | Length: 816 |
SSR | | GGACTGATCCTCCCTCTTTCCCATGGCCAAGCCATCCTCCTCTCCTCTTCCCAAATCCCAATAGAACAAAACTCTCCTCTCTCTCT
CTCTCTCTTCCAATCTTCTTCAGATTCGAAATGGCTGCAGCAATCGCTTCTCTCTCCTTTCCGGCGCTGGGCCAATCCGCAAAGAT
CTCCAATTCAACCACGCCTTCTCTTCCTCTCGCCTCCGTCTCCGCCATCTCCAGGAGGATTTCTCGTCACTCTCTGACTTCTTCTA
GAGCATCCACTTCCTCTTCGAAATTAATTATCCACTGCATGTCTAGTGTTACCGATGTGCCACCTGTATCGGAGACAAAGTCAAAC
TTCCTAAAAGCGTACAAGCGACCAATCCCCAGCATCTACAACACCGTCTTGCGGGAGCTCATCGTACAGCAGCATTTGATGAGGTA
TAAAAAGACTTACCGTTACGACCCTGTTTTCGCCCTCGGCTTCGTCACCGTCTACGATCAGCTCATGGATGGTTATCCCAGCGATC
AGGATCGCGATTCTATTTTTCAAGCCTACGTCCAAGCTTTGAATGAGGATCCTAACCAATACCGAACTGATGCGCAGAAGATGGAG
GAATGGGCGCGAAGTCAGACTTCTGCTTCACTAGTTGACTTCTCGTCTAAGAGGGAGAAGTTGAAGCGATTCTTAAGGACATTTCA
GAAAGAGCTGGCAGTAAGAGGGTTCAGTTACAGCAGTTCTTCGCTGTTGGTTTGTTCGCTTGCTTGAGCTTGCAGTGCTACTGATC
CCACCGTCCTTGACAGCTTTGTGCGTCCTAATATCACAGAAA
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| GenBank top hits (Blast detail) | Score | e value |
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| ABV89647 chloroplast light-regulated protein [Brassica rapa] | 838 | 1e-087 |
| XP_002884230 hypothetical protein ARALYDRAFT_900469 [Arabidopsis lyrata subsp. lyrata] | 747 | 4e-077 |
| AAM64943 unknown [Arabidopsis thaliana] | 722 | 3e-074 |
| NP_565491 protein THYLAKOID FORMATION 1 [Arabidopsis thaliana] | 722 | 3e-074 |
| XP_002275686 PREDICTED: hypothetical protein [Vitis vinifera] | 626 | 4e-063 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKT0 Protein THYLAKOID FORMATION 1, chloroplastic | 726 | 5e-076 |
| Q7XAB8 Protein THYLAKOID FORMATION1, chloroplastic | 560 | 9e-057 |
| Q84PB7 Protein THYLAKOID FORMATION1, chloroplastic | 530 | 3e-053 |
| B0C3M8 Protein thf1 | 256 | 2e-021 |
| Q116P5 Protein thf1 | 251 | 6e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXS3 Chloroplast light-regulated protein | 838 | 8e-088 |
| B9I6H1 Predicted protein | 619 | 2e-062 |
| C6T9W9 Putative uncharacterized protein | 612 | 1e-061 |
| B9RW80 Protein THYLAKOID FORMATION1, chloroplast, putative | 600 | 3e-060 |
| B9INV3 Predicted protein | 598 | 5e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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