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Information for unigene UN20084
| FASTA Sequence |
| Unigene ID: UN20084 | Length: 1299 |
SSR | SNP | GGAAACACGAAGAAGAGAATCAATCTCACACGAAATTACAAAACAATAATAATAATAATAGTTATTATAAATAAAACTCCAAAGCT
TGTCTGTAAGGACTCTCGTCTTCAATGTTAATCATTTAGATCTTGAGAGAGAGAGAGAGAAACAAACATCAAAAATCAAAAATCAA
GAATGGCGGCGAAATCGAAGAACAACCTCCGTTACCAACCGCGAAAATCAGCATCGCGATCGACACAAGCGTTCACGGTGCTGATC
GGTCTGCTGGTGGTGCTTATGATACTTCTGGGTCTGGGGATCTTGTCGCTTCCCAATGCCAACAGAAACTCTTCCAAGCCCAACGA
TTTGACCAACATTGTACGGAAGAGCCAGGATGAGAGTTATGGAGGAGAGGAGGAAGGGAACGGAGAGCGTTGGGTTGAAGTGATAT
CGTGGGAGCCTAGAGCTGTTGTTTACCACAATTTCTTGACCAATGAAGAATGTGAGCACCTCATCAGCCTCGCTAAACCCAACATG
GTTAAGTCAACTGTGGTCGATGAGAAAACCGGTGGCAGCAAAGATAGCAGAGTAAGGACTAGCTCTGGGACTTTTCTTAAAAGAGG
ACATGACCATGTTGTCGAGAGGATTGAGCAAAGGATTTCTGATTTCACCTTCATTCCTGTTGAAAATGGAGAAGGTCTTCAGGTTC
TTCACTACCAAGTTGGGCAGAAGTATGAGCCTCACTATGATTATTTCTTAGATGAGTTCAACACCAAGAACGGAGGACAACGAATA
GCCACTGTTCTTATGTACCTCTCGGATGTTGATGATGGTGGCGAGACCGTGTTCCCAGCAGCAAAAGGAACATTAGTGCAGTCCCA
TGGTGGGACAGCTCTCGAAATGTGGCAAAGAAGGACTTTCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAGA
CCTGATGCCTCTCTAGACCCTTCCAGTTTGCACGGTGGATGCCCAGTGGTAAAAGGAAACAAATGGTCATCCACGAAATGGTTCCA
CGTCCATGAGTTCAAGGTTTAAGAAAACTAAGATAAGAGGAGGTTTACACGACAGCAAAAGTTTGTGTGGATACATACAGTTACAA
ACAGATGTATTGTTGTATTTCCCTTTTCAAGTGAGAAGTGATCTTTAGGCTGTGTTTTATCATGAGCGATATTTAACTTTTTCTTT
TAAACTATTTGAGATTTTTGTACTTTACATGTTCTGTTTTTATAACTTCAATAATCTATAATATAATGAGGCACTTGTATCATTCC
TGATGCGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_179363 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] | 1035 | 3e-110 |
| AAM65040 putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] | 1035 | 3e-110 |
| XP_002884079 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 1021 | 1e-108 |
| XP_002869059 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 890 | 2e-093 |
| NP_195306 oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] | 851 | 8e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P54001 Prolyl 4-hydroxylase subunit alpha-1 | 264 | 4e-022 |
| Q5ZLK5 Prolyl 4-hydroxylase subunit alpha-2 | 261 | 8e-022 |
| O15460 Prolyl 4-hydroxylase subunit alpha-2 | 257 | 2e-021 |
| Q60716 Prolyl 4-hydroxylase subunit alpha-2 | 255 | 4e-021 |
| Q60715 Prolyl 4-hydroxylase subunit alpha-1 | 254 | 5e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q24JN5 At2g17720 | 1035 | 2e-110 |
| Q8LB05 Putative prolyl 4-hydroxylase, alpha subunit | 1035 | 2e-110 |
| Q9FKX6 Prolyl 4-hydroxylase, alpha subunit-like protein | 788 | 1e-081 |
| C6TM81 Putative uncharacterized protein | 768 | 2e-079 |
| B9SXB7 Prolyl 4-hydroxylase alpha subunit, putative | 755 | 7e-078 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G17720.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1044 | 1e-113 |
| AT4G35810.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 851 | 3e-091 |
| AT5G66060.1 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 788 | 6e-084 |
| AT1G20270.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 694 | 5e-073 |
| AT3G28480.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 439 | 2e-043 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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