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Information for unigene UN23256
| FASTA Sequence |
| Unigene ID: UN23256 | Length: 867 |
| SNP | TAGACGTCGTCTTACACAGTCGTTCTGTTCGACGAGATAGAGAAAGCCCACCCAGATGTTTTCAACATGATGCTTCAGATCCTCGA
AGACGGTAGACTAACAGACAGCAAAGGAAGAACGGTGGACTTCAAAAACACGCTTCTCATCATGACATCAAACGTCGGAAGCAGTG
TGATTGAGAAAGGAGGAAGACGTATTGGTTTCGACTTGGACTACGACGAGAAAGACAGCAGCTACAACAGAATCAAGAGCCTTGTG
ACCGAGGAGCTGAAACAGTACTTCAGACCGGAGTTCCTCAACAGGCTCGACGAGATGATTGTGTTCAGACAGCTAACGAAGCTGGA
AGTGAAGGAAATTGCAGACATTCTGTTACAGGAAGTGTTTGAGAGGCTGAAGAAGAAGGAGATCGAGCTTCAAGTGACTGAGAGGT
TCAGAGAGAGAGTAGTGGACGAAGGTTACAACCCGAGCTATGGAGCGAGACCTTTGAGAAGAGCCATCATGAGACTTTTAGAGGAT
AGTATGGCAGAGAAGATGCTAGCGAGAGAGATCAAGGAAGGAGACTCGGTGATTGTGGACGTTGACTCTGAAGGTAAAGTGACTGT
GCTAAATGGTGGAAGTGGCACTCCGACAACATCCTTGGAGGAGCAGGAAGATTCTCTCCCCGTTGCTTGAAATAAAAAAAGAGAAG
TGTGTTTCTTCTCTCTTCTTTTGCTTTTCCCCCCTTGAACGAATTTGGCAAAAGAAGAGTCTCAATGAGATACCTGGGGGGTTTCG
TAATATACATTTCTATATATGTAACCAATGTAATGTATAGATGACATTGTGTAGCTTCTTTTTCAATGCTTTTTAAGGACTTGCTT
TGGTGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_568746 ATP-dependent Clp protease ATP-binding subunit ClpC [Arabidopsis thaliana] | 1076 | 3e-115 |
| AAC04687 ClpC [Arabidopsis thaliana] | 1076 | 3e-115 |
| XP_002865831 heat shock protein 93-V [Arabidopsis lyrata subsp. lyrata] | 1076 | 3e-115 |
| CAN78847 hypothetical protein VITISV_010724 [Vitis vinifera] | 994 | 1e-105 |
| XP_002284518 PREDICTED: hypothetical protein [Vitis vinifera] | 994 | 1e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46523 ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) | 1050 | 2e-113 |
| P35100 ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic | 991 | 1e-106 |
| P31542 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic | 983 | 9e-106 |
| P31541 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic | 972 | 2e-104 |
| Q1XDF4 ATP-dependent Clp protease ATP-binding subunit clpA homolog | 785 | 8e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O48931 ClpC | 1076 | 2e-115 |
| Q9FI56 AT5g50920/K3K7_7 | 1076 | 2e-115 |
| A5BB92 Putative uncharacterized protein | 994 | 7e-106 |
| B9RA77 ATP-dependent clp protease, putative | 970 | 4e-103 |
| A3ATE4 Putative uncharacterized protein | 965 | 2e-102 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G50920.1 CLPC1; ATP binding / ATP-dependent peptidase/ ATPase | 1077 | 1e-117 |
| AT3G48870.1 HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 933 | 5e-101 |
| AT5G51070.1 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 550 | 1e-056 |
| AT2G25140.1 CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 451 | 4e-045 |
| AT5G15450.1 CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding | 424 | 5e-042 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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