Information for unigene UN23851
| FASTA Sequence |
| Unigene ID: UN23851 | Length: 751 |
SSR | | GGAAAACCTTCCCTTTTCAATTCTGCTTCTTCCTCTTAAGCTTAATAGGGTTTCCTCATTCCCAGGCTCCATGACTTCCTGCGATT
TCTCCCCCTCTGCTTGATTCTCTCTCTCTCTCTCAGATTGAAGAAGAAGAAGAAGAAGAAGAGATGAATGTGAGTCATGCATCGGT
GCATCCGGTGGAAGATCCTCCTCCAGCTACAGCAGCCACACAACAACAAGTAGAGAATAATCATCCGCCACGTGTTAGGATGGATG
ATATAGAAGGCATGCCTGGCACTTTACTCGGCGTCGCTCTTCGTTTCTTCCAGTTCTTCTTTGCTGCTGCTTCTCTTTCCGTCATG
GCTTCTACTTCTGACTTCCCTTCCGTCACCGCCTTCTGCTACCTAGTTGCAGCCACTGGACTGCAGAGCTTGTGGAGTCTTGCACT
AGCCGCCGTTGATGTCTATGCCATTATGGTCAAACGTTCGCTTCAGAACCGACGGCTTGTGGGCGTGTTTGCAATTGGCGATGGGG
TGACGTCGACCCTGACTTTTGCAGCGGCTTGTGCATCGGCGGGCATAACGGTGCTGATAGACAATGATCTGAATAGCTGCTCACAA
AACCACTGTGTTCAGTTTGAAACATCAACAGCATTAGCCTTCATAAGCTGGTTTGCTGCTTTGCCTTCTTTTCTCTTCAACTTCTG
GTCTCTCGCATCCCGTTGATAAAGACATACAATATGATGTTGCTGCTCACGAGCATGCGTTTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565671 uncharacterized protein [Arabidopsis thaliana] | 796 | 7e-083 |
| XP_002880929 hypothetical protein ARALYDRAFT_481668 [Arabidopsis lyrata subsp. lyrata] | 777 | 1e-080 |
| XP_002529944 conserved hypothetical protein [Ricinus communis] | 712 | 4e-073 |
| ACU16925 unknown [Glycine max] | 682 | 1e-069 |
| ACU15997 unknown [Glycine max] | 666 | 9e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKN3 UPF0497 membrane protein At2g28370 | 827 | 9e-088 |
| Q6NPF8 UPF0497 membrane protein At2g37200 | 514 | 2e-051 |
| Q8L7R5 UPF0497 membrane protein At3g23200 | 356 | 4e-033 |
| Q945M8 UPF0497 membrane protein At3g53850 | 352 | 1e-032 |
| Q9LZM5 UPF0497 membrane protein At5g02060 | 330 | 4e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SVC5 Putative uncharacterized protein | 712 | 3e-073 |
| C6T5C3 Putative uncharacterized protein | 682 | 8e-070 |
| C6T2V9 Putative uncharacterized protein | 666 | 6e-068 |
| B9HQ90 Predicted protein | 649 | 6e-066 |
| B9MZ54 Predicted protein | 618 | 2e-062 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G28370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 828 | 6e-089 |
| AT2G37200.1 integral membrane protein, putative | 515 | 1e-052 |
| AT3G23200.1 unknown protein | 356 | 3e-034 |
| AT3G53850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G02060.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 352 | 1e-033 |
| AT5G02060.1 integral membrane protein, putative | 330 | 3e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
| Software error:
can't close file: No space left on device at /var/www/cgi-bin/radish/EST/search.cgi line 576.
For help, please send mail to the webmaster (feibioinfolab@gmail.com), giving this error message
and the time and date of the error.
|
