Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN30553

FASTA Sequence
Unigene ID: UN30553Length: 903 SSR 
GGCCACTTCCTTGTCTGTCTGCCTCTCTCTCTCTCTCTCTCTTTCTCTCCTAGTAAATGCTGTCTCTAACCTCTTGATCCGAGAAA
AATGGCAAGTCTATCTTCGTAGGAAGACGAAGAATGCTCTTCCGAGAGATGCGGAAGCTACAGCCCCAGCGCCGACGTTAGTTGCC
AGTCGGAGAGTTCGAGCAGCTTCTTCGGAGAAGCCTCTAGCCCCCGTAGGTTTTACTTCCCGGCCCCTGTCATGCTTCCGGTCATC
GGCGGCAAAGACGTTGTCTGGGATGACAAGTCAGAGAAACAGAACAGCGACTTATCCGAAATTGAGATGATGAAGGAGAGATTTGC
TAAGTTGCTTCTCGGAGAAGACATGTCTGGAGGAGGTAAAGGTGTTTGTACAGCTCTTGCAATCTCCAACGCCATTACCAATCTCT
CTGCGACTGTGTTTGGTGAGCTATGGAGGCTTGAGCCTCTTGCTCCTCAAAAAAAGGCAATGTGGCGTAGAGAGCTTGAGTGGTTA
CTCTGTGTCTGCGATTCCATCGTTGAGCTCATTCCTTCCACTCAGCAGTTCCCTGGAGGAGGTGGTGGGACTTACGAGATCATGGA
GACTCGTCCTCGTTCTGATCTCTATGCCAACCTCCCTGCTCTTAAGAAGCTCGATGCAATGTTGATTGATATGCTTGACGGGTTTT
CCGACACTGAGTTCTGGTATACTGATCGTGGGATTGGTCTTGGAGATTGTGAAAAGGAGTCTTACGACTCTCCGGCTTCCCGTGGT
GGCGGTGGTGGTCGTCCTTCCTTTAGGCAGGAGGAGAAGTGGTGGCTGCCTTGCCCTAAGGTTCCACCTAACGGTTTGTCTGAAGA
GACAAGGAAGAAACTCCAGCAGTGCCGGGACTTTGCTAACCAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_195556 Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana]11401e-122
AAL07042 unknown protein [Arabidopsis thaliana]11401e-122
XP_002306208 predicted protein [Populus trichocarpa]9412e-099
XP_002312931 predicted protein [Populus trichocarpa]9341e-098
XP_002282312 PREDICTED: hypothetical protein [Vitis vinifera]9213e-097

Swiss-Prot top hits (Blast detail)Scoree value
Q93ZY2 Rop guanine nucleotide exchange factor 111406e-124
Q9LQ89 Rop guanine nucleotide exchange factor 25359e-054

TrEMBL top hits (Blast detail)Scoree value
B9H1M7 Predicted protein9411e-099
B9HR10 Predicted protein9347e-099
B9SR08 Rop guanine nucleotide exchange factor, putative8773e-092
B9H5D7 Predicted protein (Fragment)8163e-085
B9GQ53 Predicted protein8102e-084

Arabidopsis top hits (Blast detail)Scoree value
AT4G38430.1 ROPGEF1; Rho guanyl-nucleotide exchange factor/ protein binding11405e-125
AT4G00460.1 Rho guanyl-nucleotide exchange factor5501e-056
AT4G00460.2 Rho guanyl-nucleotide exchange factor5501e-056
AT5G02010.1 ROPGEF7; Rho guanyl-nucleotide exchange factor5366e-055
AT1G01700.1 ROPGEF2; Rho guanyl-nucleotide exchange factor/ protein binding5358e-055

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  50%
 
181  50%

Unigene MembersMember information