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Information for unigene UN37548
| FASTA Sequence |
| Unigene ID: UN37548 | Length: 698 |
SSR | | GGTCGTATGAATGTGGGTAGAGGCGGATTTGGTCGGTTTGGTAATAATAATATGGATGGTCGAGGCTTTGGTCGTGGTGGTGGTAG
AGGCTTTAGTCGTGGTGGTGGTGGTGGGCGATTTGATAACAGAAGGGGTAGAAGCCGTAGCAGAAGTCCTGATTTGTTTAGGCCAC
GTCGTAGCCCGAGCTATAGCAGGAGCCGCAGCAGGAGCTATAGTCTTAGCCGTAGTAGGAGCTGGTCACGCTCAAGGAGTCGTAGC
CCTAGGCGTAGTGGTCATAAACGGAGTAGAAGCTATAGCCGTAGTCCTAGTCCGGTTTATGAAAGACGGGATAGGCGACAGCGTGT
TTCTGGGTTTGATATCAAACCACCAGCTGAGTCTGTCGTGAATCCGGACACTGTAGGAGCTGCTGCTTCTGAAAACGTGGTCCCTG
CTCCATTGTTTGAGAGACAAGGGAATGGTGTTGTCGAGTTTGAACTAAAACCAGCTTTAGTTCATGAACCCTAAAAGCCAAGACTC
GAAACAGAGAATGATTTCAACACCTCAAAATGAAGAAATCACTATTCATCCCAATATGTTTGGTTATTGAATTGGAGGTTTTCCTG
GATTTGTTGGCTGGAGTTTCTTTATTCATATTTTGTTTAATTTTCCTCGTTTCACTTTGTTGTATTATGGAGAGTTAGTTTGTAAT
GTATTTGAGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884587 hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata] | 623 | 7e-063 |
| NP_187299 DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] | 574 | 3e-057 |
| ACM08351 Splicing factor, arginine/serine-rich 2 [Salmo salar] | 165 | 9e-010 |
| ACN10350 Splicing factor, arginine/serine-rich 2 [Salmo salar] | 165 | 9e-010 |
| NP_001182415 serine/arginine-rich splicing factor 7 isoform 3 [Mus musculus] | 160 | 4e-009 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 | 600 | 2e-061 |
| Q8CGZ0 Calcium homeostasis endoplasmic reticulum protein | 149 | 3e-009 |
| Q8IWX8 Calcium homeostasis endoplasmic reticulum protein | 143 | 2e-008 |
| Q05049 Integumentary mucin C.1 (Fragment) | 142 | 2e-008 |
| O22315 Pre-mRNA-splicing factor SF2 | 137 | 8e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7ZV13 Splicing factor, arginine/serine-rich 2 | 169 | 2e-010 |
| B9ELF4 Splicing factor, arginine/serine-rich 2 | 165 | 7e-010 |
| C0H8I1 Splicing factor, arginine/serine-rich 2 | 165 | 7e-010 |
| D3ZAX5 Putative uncharacterized protein Cherp | 155 | 9e-009 |
| B5XDF3 Splicing factor, arginine/serine-rich 2 | 155 | 9e-009 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G06480.1 DEAD box RNA helicase, putative | 600 | 2e-062 |
| AT1G02840.1 SR1; RNA binding / nucleic acid binding / nucleotide binding | 137 | 7e-009 |
| AT1G02840.3 SR1; RNA binding / nucleic acid binding / nucleotide binding | 137 | 7e-009 |
| AT1G07350.1 transformer serine/arginine-rich ribonucleoprotein, putative | 133 | 2e-008 |
| AT1G02840.2 SR1; RNA binding / nucleic acid binding / nucleotide binding | 130 | 5e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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