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Information for unigene UN42548
| FASTA Sequence |
| Unigene ID: UN42548 | Length: 802 |
SSR | | GGGGCAGATTGGAAGATTGTCTGCAATTATTGGTGGAGAGCAACCGGATACCAGAAGCTGCTCTGATGGCACGTTCTTATCTTCCA
AGCAAAGTTTCAGAGATAGTTGCTCTTTGGAGGAAAGATCTCAGCAAGGTTAATTCGAAAGCAGCAGAATCTTTGGCTGATCCTGA
AGAGTACCCAAATCTTTTTGAGGATTGGCAAATTGCTCTTTCTGTTGAAGCGAAAGCTGTAGAGACGAGGGGAGTTTATGCTGCTG
CAGAAAATTATCCAACCCACGCTGATCAACCTGCCATTACCCTCGTGGAAGCCTTCAGAAACCCGCAAGTTGAAGCAGAGGAAACA
CTTGAAAATGGACACATGGAACAAGAGTCTGAGCAGGTAGCAGAAGAAAATGGTCATGAAGAGAATGAAGAGGAGCAGCAACATGA
AGAAGAAGAAGAAGAAGTGAATCAAGAAGAGGGAGTTGTTGTTGATGGAGACTCAACGGATGGTGGCGCTGTACTTGTTAATGGAA
GTGAGGGTGAGGAAGAGTGGGGTACGAATAACAAAGGAAACCAACCAGCCTAATAAAGCAAAGCTTACGCCACGTCAATAGCCAGT
TACAGTACTTGGGATGCGTTCCGGAGCAGGAAGTGGTGGTCTTTTTTTCTTCAAAGTGGTATTGTGGTTTTCTCGTATAATTAATC
ATTATAAAGTACATTAGAGAGTTTCTTTCGAACAAGTTACTGCTTTAGATTTCACAGCTCATGTTTACAGATTGCTAGTGCATATA
TAATTCTTTCGGAGACCCTTACTTTTGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB02664 coatomer protein complex, beta prime; beta'-COP protein [Arabidopsis thaliana] | 736 | 8e-076 |
| NP_188219 coatomer subunit beta'-3 [Arabidopsis thaliana] | 736 | 8e-076 |
| BAH57004 AT3G15980 [Arabidopsis thaliana] | 736 | 8e-076 |
| NP_001189908 coatomer subunit beta'-3 [Arabidopsis thaliana] | 736 | 8e-076 |
| XP_002891693 hypothetical protein ARALYDRAFT_474357 [Arabidopsis lyrata subsp. lyrata] | 734 | 1e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C827 Coatomer subunit beta'-2 | 713 | 2e-074 |
| Q8L828 Coatomer subunit beta'-3 | 681 | 8e-071 |
| Q9CAA0 Coatomer subunit beta'-1 | 557 | 2e-056 |
| Q6H8D6 Putative coatomer subunit beta'-3 | 482 | 1e-047 |
| Q6H8D5 Coatomer subunit beta'-2 | 479 | 2e-047 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DFE3 AT3G15980 protein | 736 | 5e-076 |
| C0Z2S5 AT3G15980 protein | 736 | 5e-076 |
| B9GEK6 Predicted protein (Fragment) | 642 | 4e-065 |
| A9PF13 Predicted protein | 557 | 3e-055 |
| B9SQC0 Coatomer beta subunit, putative | 509 | 1e-049 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G15980.2 coatomer protein complex, subunit beta 2 (beta prime), putative | 756 | 2e-080 |
| AT3G15980.3 coatomer protein complex, subunit beta 2 (beta prime), putative | 756 | 2e-080 |
| AT1G52360.1 coatomer protein complex, subunit beta 2 (beta prime), putative | 714 | 1e-075 |
| AT3G15980.1 coatomer protein complex, subunit beta 2 (beta prime), putative | 681 | 8e-072 |
| AT1G79990.3 protein binding / structural molecule | 557 | 2e-057 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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