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Information for unigene UN50588
| FASTA Sequence |
| Unigene ID: UN50588 | Length: 1044 |
SSR | | AGAGGAACCTTTTCTACAACAAGCCTCAACCTTCTTCTTCAATCAAATCAATCGCATCCGCTTTTTCCTGATTCTCCGTCGACGAA
ATACGATTCCGTTGTTGATCGATGAACTTGTCAAGGCGACTGGCTCTGTTAGGAGCTCAATCCGCGCTCTCAATCGCCAGACCCCG
AGGAGGTCTGGGCTCCTCCTCCTCCTCCTACGGCTTAATTGATCGGCGTCCCTTCCAGTTCCGGCAAATCTCGGAGCTAACCAAAG
TCAATGGGAAGCGTGCTTTTCTCGTCGATACCTTGGCTCTGGTGAGGAGTCTTGAAGCACAAGGTGTTCCATCGAAACAAGCTGAG
GCCATTACTTCTGCCATCACTGAGGTTTTGAATGATAGCTTGGAGAACGTCTCCGAGTCCTTTGTTTCCAAGGCTGAGATGCAGAA
GATTGAAATGCTCCAAGATTCTAACCTCTCCAAATTTAAATCTGAAGTCAAAAGCTCTCAGGAGCATCATTTTACTGTTTTACAAC
GCGAGACAGAAAAACTAAGAGGGGATATAGAGAAGATGAGAAGCGAGCTAAGGTATGAAATTGATAAGGTCACAGCTGGACAACGC
TTGGATTTGAATCTTGAAAGAGGCCGGATACGTGATGAGCTAGCTAATCAGAATTCAGAAACAACAAACCTCACGAACAAGCTTGA
CAGAGAAATTCATGCATTGAGAGCTCAACTAGAAGCGGCCAAATACGAAGTAATCAAATACTGCATTGGTACACTTGTCTCCATTT
CAGCAGTTGGACTCGCAGTCCTTCGCATAATGATGTAGTTGAATCTAACCCTCAAGACTTATATGCTCAAAACAAAAGTTGGTAGA
TTCTCATTTTTTTTACTTGAAACCTCAGCGTCATATTCTTTTTTTCTTTTCTGGCGAGGAAAAGGGAGAAAAAAACAATGTTATTG
TAATCGTGATCTCTTGGGCTAATTATCCTTGCTAGAACAGGTTTTGAATTTGCCGCGAGTATTATATTCAATCCAAGAATCGTTGG
TTTCTTATTACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565388 uncharacterized protein [Arabidopsis thaliana] | 1014 | 7e-108 |
| XP_002886229 hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata] | 998 | 5e-106 |
| XP_002313013 predicted protein [Populus trichocarpa] | 853 | 3e-089 |
| XP_002533806 conserved hypothetical protein [Ricinus communis] | 829 | 2e-086 |
| NP_001058564 Os06g0713100 [Oryza sativa Japonica Group] | 814 | 1e-084 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P43557 Protein FMP32, mitochondrial | 243 | 8e-020 |
| Q4V897 Coiled-coil domain-containing protein 90B, mitochondrial | 205 | 2e-015 |
| Q9GZT6 Coiled-coil domain-containing protein 90B, mitochondrial | 204 | 3e-015 |
| Q8C3X2 Coiled-coil domain-containing protein 90B, mitochondrial | 202 | 4e-015 |
| Q6DJ87 Coiled-coil domain-containing protein 90B, mitochondrial | 195 | 3e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SIV6 Expressed protein | 1014 | 5e-108 |
| B9HRG4 Predicted protein | 853 | 2e-089 |
| B9T6D7 Putative uncharacterized protein | 829 | 1e-086 |
| B8B2H5 Putative uncharacterized protein | 814 | 7e-085 |
| Q5Z5X5 Os06g0713100 protein | 814 | 7e-085 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G16460.1 metal ion binding | 1028 | 6e-112 |
| AT3G51090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT2G16460.1); Has 369 Blast hits to 367 proteins in 118 species: Archae - 2; Bacteria - 7; Metazoa - 171; Fungi - 104; Plants - 48; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink). | 781 | 3e-083 |
| AT2G16460.2 metal ion binding | 743 | 7e-079 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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