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Information for unigene UN52942
| FASTA Sequence |
| Unigene ID: UN52942 | Length: 742 |
SSR | | GGCCGATTTCACGAACCGAAACCCTAAATTTCTCGGGACACTACCTCCTTTCCTCTTCTTCACCGGGAGGGATTTAATCGGAGCCG
AGTCTAGGGCTTTTCATTTCGGGTATAACTAGAGCGTGGAGTGAGAAAGCCTAAAAGCAATGGAATCAGATCAGGGAAAGCTCTTT
ATCGGCGGCATTTCATGGGAAACCGACGAGAACCTTCTGAGAGAGTACTTCAGCAATTTCGGAGAGGTTTCACAGGTGACTGTGAT
GCGAGACAAAGCTACAGGTCGTCCCATAGGATTCGGATTCGTCGCGTTCTCCGATCCCGCCGTTATCGATAGAGTTCTTCAGGACA
AGCACCATATCGACAATAGAGATGTTGATGTGAAGAGAGCAATGTCTAGAGACGAGCAGAGTCCTGCAGGGAGGCAAGGGAGTTTT
AATGGTAATAGGAGTTTTGATAGTGGTGGTGGTGGTGGTGTTAACGTTAGGACCAAGAAGATATTTGTTGGTGGTTTGCCTCCTGC
TTTAACGTCGGATGAGTTTAGAGCTTACTTCGAGACTTACGGCCCTGTGAGCGATGCGGTGATTATGATTGACCAGGCCACACAAC
GTCCTAGAGGGTTTGGGTTTGTTTCGTTCGACTCTGAAGATTCGGTTGACCTTGTTTTGCACAAGACTTTCCATGATTTGAGTGGT
AAACAAGTGGAAGTTAAAAGAGCTCTTCCTAAAGACGCTAATCCTGGAGGAGCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879449 hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp. lyrata] | 932 | 1e-098 |
| NP_180899 RNA recognition motif-containing protein [Arabidopsis thaliana] | 931 | 2e-098 |
| XP_002870323 hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp. lyrata] | 787 | 8e-082 |
| NP_193166 ribonucleoprotein 1 [Arabidopsis thaliana] | 780 | 5e-081 |
| CAN68016 hypothetical protein VITISV_025150 [Vitis vinifera] | 745 | 6e-077 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q96EP5 DAZ-associated protein 1 | 405 | 7e-039 |
| Q9JII5 DAZ-associated protein 1 | 404 | 1e-038 |
| Q98SJ2 DAZ-associated protein 1 | 397 | 6e-038 |
| O94432 Uncharacterized RNA-binding protein C660.15 | 251 | 5e-021 |
| Q99383 Nuclear polyadenylated RNA-binding protein 4 | 237 | 2e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22791 Putative RNA-binding protein | 931 | 1e-098 |
| Q8W034 Ribonucleoprotein 1 (Fragment) | 780 | 4e-081 |
| A5BK88 Putative uncharacterized protein | 745 | 4e-077 |
| B9SQV8 Heterogeneous nuclear ribonucleoprotein 27C, putative | 737 | 3e-076 |
| B9HSS5 Predicted protein | 705 | 2e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33410.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 931 | 7e-101 |
| AT4G14300.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 780 | 2e-083 |
| AT5G55550.1 RNA recognition motif (RRM)-containing protein | 616 | 2e-064 |
| AT5G55550.3 RNA recognition motif (RRM)-containing protein | 616 | 2e-064 |
| AT5G55550.2 RNA recognition motif (RRM)-containing protein | 616 | 2e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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