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Information for unigene UN68899
| FASTA Sequence |
| Unigene ID: UN68899 | Length: 668 |
SSR | | GAGAGTATGCATCGACTTCAAAAACAAGGAAGCTATGTCAAAGGTGAAGAAGCAAAATTTCAGCGATGATGAAGATGCTGATGAAG
ACGAAGAAGATGATGATGATGATGATGAGGATGAGGATGATGAAGAAGATGAAGATGGAGAGTTCGGTACTTTTGCTGGTGAAGAC
AATGAAGAGTCAGACAAACTGGGAAAGGCCAGATATGAGGATTTCTTTGGTGGTAAAAAGAAGGAGACAAAAATGAAGATGAGAGA
TGTCAATGAAGATGAGGAAGCTGGAAATGGAAACCAAGGCGATGAAGAACTCTCTACCCATGAGAAAGAACTACTAAAGCTTCAAT
CCAAGATTGATCAGATGGAGAAAGCAAACTTAGATCCTAAACACTGGACTATGCAGGGAGAGGTAACTGCTACAAAGAGGCCAAAG
AATAGTGCTTTAGAAGTTGATTTAGATTTTGAGCACAATGCCAGGCCTCCTCCTGTAATCACAGAAGAGGTCACTGCCTCACTTGA
GGATATGATCAAGAACCGAATCATTGAGGCTCGTTTTGATGATGTTCAACGAGCACCTAGCCTGCCCACTAAATCCAAAAGAGAAG
CCAAGGAATTGGACGATAATAAAAGCAAGAAAGGTCTAGCCGAAGTTTACGAGGAAGAATACGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002865060 hypothetical protein ARALYDRAFT_496951 [Arabidopsis lyrata subsp. lyrata] | 820 | 9e-086 |
| NP_569037 uncharacterized protein [Arabidopsis thaliana] | 784 | 1e-081 |
| XP_002321609 predicted protein [Populus trichocarpa] | 679 | 2e-069 |
| XP_002511381 U3 small nucleolar ribonucleoprotein protein mpp10, putative [Ricinus communis] | 651 | 4e-066 |
| XP_002318058 predicted protein [Populus trichocarpa] | 601 | 2e-060 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q810V0 U3 small nucleolar ribonucleoprotein protein MPP10 | 332 | 2e-030 |
| O00566 U3 small nucleolar ribonucleoprotein protein MPP10 | 327 | 7e-030 |
| P47083 U3 small nucleolar RNA-associated protein MPP10 | 316 | 1e-028 |
| O13910 U3 small nucleolar ribonucleoprotein protein mpp10 | 295 | 3e-026 |
| P53214 Protein MTL1 | 169 | 1e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FJY5 AT5g66540/K1F13_21 | 784 | 1e-081 |
| B9IET6 Predicted protein | 679 | 1e-069 |
| B9RB06 U3 small nucleolar ribonucleoprotein protein mpp10, putative | 651 | 3e-066 |
| B9I3B9 Predicted protein | 601 | 2e-060 |
| C5Z1E1 Putative uncharacterized protein Sb09g026144 | 550 | 1e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G66540.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species: Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source: NCBI BLink). | 784 | 7e-084 |
| AT2G21420.1 zinc finger protein-related | 148 | 4e-010 |
| AT1G48400.1 F-box family protein | 129 | 6e-008 |
| AT5G63740.1 zinc finger protein-related | 122 | 4e-007 |
| AT5G15140.1 aldose 1-epimerase family protein | 122 | 4e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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