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Information for unigene UN70600
| FASTA Sequence |
| Unigene ID: UN70600 | Length: 645 |
SSR | | TTTTTCTTGGTTGGATAATGGCAGCCTCCTCCTCCTGCTTCGCAATTCCCTTATCTTCTTCTCGATCATCTTCCAATGCCATCCCA
AAATGCAAAACCTTAACCTCTTCTTGCTTTTACGTAGCATCTCTCAAAGCTTCTTCCACCTCTTTCCATCTCTCTTCTCTTTCTCG
CCAACGACTTCAACTCAAGGTCTCTTCTTCTTCTTCAGAATTATCAGTTCTGGATGAAGCGAAACAAGAAGAAGAAGAAGTTAAAG
TTGATGGAGAGACAGGAGAAGAAACCGAAGCGGAGCCAGTGGTGACGAAGAAACCGAGACCTTGCGAGCTGTACGTTTGTAATATC
CCAAGAAGCTATGACATTACTCAGCTTCTCGACATGTTTCAGTCATTTGGAACTGTCATCTCCGTCGAGGTATCGCGAAATCCAGA
GACTGGAGAGAGCCGTGGAAGCGGTTATGTCACAATGAGTTCTATCAACTCTGCCAAAAACGCCACTGCGTCTCTTGATGGAAATG
AAGTAGGTGGTCGGGAGATGCGGGTTAGGTACTCTGTTGATATGAATCCAGGAACCAGAAAAACACATCAGCCTTGAACTCGACAC
CTAAGAAGATTCTCATGTACGAAAGCCCGTACAAAGTTTATGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889386 predicted protein [Arabidopsis lyrata subsp. lyrata] | 610 | 2e-061 |
| NP_001030925 RNA recognition motif-containing protein [Arabidopsis thaliana] | 605 | 7e-061 |
| NP_171616 RNA recognition motif-containing protein [Arabidopsis thaliana] | 540 | 3e-053 |
| XP_002515076 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 383 | 4e-035 |
| AAF26472 T25K16.8 [Arabidopsis thaliana] | 381 | 7e-035 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 194 | 2e-014 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 164 | 5e-011 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 162 | 9e-011 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 160 | 1e-010 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 157 | 3e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2V4R5 Putative uncharacterized protein At1g01080.2 | 605 | 5e-061 |
| Q8W592 At1g01080/T25K16_7 | 540 | 2e-053 |
| B9RNK5 Ribonucleoprotein, chloroplast, putative | 383 | 3e-035 |
| Q9MAM6 T25K16.8 | 381 | 5e-035 |
| B9I948 Predicted protein | 346 | 6e-031 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 605 | 3e-063 |
| AT1G01080.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 540 | 1e-055 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 160 | 1e-011 |
| AT4G03110.1 RNA-binding protein, putative | 155 | 5e-011 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 149 | 3e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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